PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA44G00220
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family CAMTA
Protein Properties Length: 1025aa    MW: 115098 Da    PI: 6.1468
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA44G00220genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1181.87.7e-5751222118
        CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                 l+e ++rwl++ ei++iL+n+e++++++e+++ p sgsl+L++rk++ryfrkDG++w+kkkdgkt++E+hekLKvg+++vl+cyYah+e+n++fqrr+y
  AA44G00220   5 LSEaQHRWLRPAEICEILQNYENFHISSESPSLPASGSLFLFDRKVLRYFRKDGHNWRKKKDGKTIKEAHEKLKVGSIDVLHCYYAHGEDNENFQRRSY 103
                 45559********************************************************************************************** PP

        CG-1 100 wlLeeelekivlvhylevk 118
                 w+Le+el +iv+vhylevk
  AA44G00220 104 WMLEQELMHIVFVHYLEVK 122
                 ****************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.9781127IPR005559CG-1 DNA-binding domain
SMARTSM010761.0E-834122IPR005559CG-1 DNA-binding domain
PfamPF038594.5E-507121IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.82E-14414500IPR014756Immunoglobulin E-set
PROSITE profilePS5029714.265599670IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484037.77E-16600724IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.3E-15600725IPR020683Ankyrin repeat-containing domain
CDDcd002043.17E-11605722No hitNo description
PROSITE profilePS500888.977616648IPR002110Ankyrin repeat
SuperFamilySSF525401.35E-8839891IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.051839861IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.693841869IPR000048IQ motif, EF-hand binding site
PfamPF006127.7E-4841860IPR000048IQ motif, EF-hand binding site
SMARTSM000150.026862884IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.56863887IPR000048IQ motif, EF-hand binding site
PfamPF006121.2E-4865884IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1025 aa     Download sequence    Send to blast
MQQLLSEAQH RWLRPAEICE ILQNYENFHI SSESPSLPAS GSLFLFDRKV LRYFRKDGHN  60
WRKKKDGKTI KEAHEKLKVG SIDVLHCYYA HGEDNENFQR RSYWMLEQEL MHIVFVHYLE  120
VKGNRTTVSG MKENNSNSVN GTASVNIDST TSPTSTLSSL CEDGDSGDSH QSSSILRASS  180
EPQTGIHDGW TSAPGIHSVH ETRDIESDSQ RLVHVTAWDA VGNSATRYPD PTSNDLLTKL  240
QPCNTGAMSV REKTDKSGLL TPELLRNPLQ PQLNWQIPLQ DDLPLPKWSM DLVSHSGMGD  300
DTGLALFEQS AHDNFETFSN LLGSHQQLTG NSFQALPSSM EPEYIPLKKS LLRKEDSLNK  360
VDSFSRWASK ELGEMEDLQM HSSGGDMAWT TVECATAAAG PSLCPSLSED QRFTIVDFWP  420
KCAHTDSEVE VMVIGTFLLS HQEVTNYNWS CMFGEVEVPA EILVDGVLCC HAPPHTFGQV  480
PFYVTCSNRF ACSEVREFDF LPGSTKKPNA VDMYGTYTNE ASLHLRFEKM LAHRAPIDEH  540
HIFEEVGEKR RKISKIMLLK EEKETLLLGG TYERDSSTKQ EPTEQLFKEQ LEDELYTWLI  600
HKVTEEGKGP NILDADGQGI LHFAAALGYD WAIKPILAAG VSINFRDING WSALHWAAFS  660
GSHFHVELTL YPVNFREETV AVLVSLGADT GALADPSPKH PMGKTAADLA YVNGQRGISG  720
FLAESSLTSY LEKLTMNPNE NSSPNSSGTK AVQTVSERTA APMSYGDVPE TLSLKDSLTA  780
VRNATQAADR LHQVFRMQSF QRKKLTELNN DEIDTTDDEL ALSFAAAKSK NSKHNEGTTV  840
HSAAIHIQKK YRGWKKRKEF LFIRQRVVKI QAHVRGHQAR KHYRPIVWSV MLLEKIILRW  900
RRKGSGLRGF KSNAIPKTIE PLTSSVSPTP QEDDYDFLKQ GRKQTEERLQ KALTRVKSMA  960
QYPEARDQYR RLLTVVEGYR ENEVENEASS SSAMNNIEGA INFEDDDLIG IDSLLDQHSL  1020
MSISP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399418.10.0hypothetical protein EUTSA_v10012552mg
SwissprotQ9FY740.0CMTA1_ARATH; Calmodulin-binding transcription activator 1
TrEMBLV4N5T00.0V4N5T0_EUTSA; Uncharacterized protein
STRINGfgenesh2_kg.6__888__AT5G09410.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein